Index

D

doKSEAAnslysis() (phosphomatics.Phosphomatics method)

G

get_kwargs() (in module phosphomatics) getActiveDataGroup() (phosphomatics.Phosphomatics method) getDataSetToken() (phosphomatics.Phosphomatics method) getEnrichmentForProteinList() (phosphomatics.Phosphomatics method)

getLDA() (phosphomatics.Phosphomatics method) getPCA() (phosphomatics.Phosphomatics method) getQuantitationPlotForSelectedKinase() (phosphomatics.Phosphomatics method) getSequenceAnslysis() (phosphomatics.Phosphomatics method) getUserDataGroups() (phosphomatics.Phosphomatics method)

I

InvalidKey

M

makeClusterMap() (phosphomatics.Phosphomatics method) makeCorrelationMatrix() (phosphomatics.Phosphomatics method) makeDistributionPlot() (phosphomatics.Phosphomatics method) makeFeatureAbundancePlot() (phosphomatics.Phosphomatics method) makeKinaseClusterMap() (phosphomatics.Phosphomatics method) makeKinaseSCurve() (phosphomatics.Phosphomatics method) makeKinaseVolcanoPlot() (phosphomatics.Phosphomatics method)

makePhosphorylationNetworks() (phosphomatics.Phosphomatics method) makeQuantilePlot() (phosphomatics.Phosphomatics method) makeSCurve() (phosphomatics.Phosphomatics method) makeSubstrateCorrelationPlot() (phosphomatics.Phosphomatics method) makeVolcano() (phosphomatics.Phosphomatics method) module phosphomatics

N

NoDataSetTokenError

NoPhosphomaticsKey

P

phosphomatics module

Phosphomatics (class in phosphomatics) process() (phosphomatics.Phosphomatics method)

S

setDataSetToken() (phosphomatics.Phosphomatics method)

setSelectedGroup() (phosphomatics.Phosphomatics method) startNewExperiment() (phosphomatics.Phosphomatics method)

U

uploadExperimentalData() (phosphomatics.Phosphomatics method)

uploadParameterSet() (phosphomatics.Phosphomatics method)

V

volcano() (phosphomatics.Phosphomatics method)