Phosphomatics is a public resource for statistical and downstream analysis of phosphoproteomics data. The graphical web resource can be accessed here. A limited API is available that allows users to automate the process of uploading and initial data processing. Here, we provide a python wrapper to this API.
This is very much a work in progress so use at your own risk.
Create a virtual environment:
virtualenv venv source venv/bin/activate
Either install from PyPi:
pip install phosphomatics-api-wrapper
Or clone the GitHub repo and install manually:
git clone https://github.com/mgleeming/phosphomatics-api-wrapper.git cd phosphomatics-api-wrapper pip install -r requirements.txt python setup.py install
A unique key is required to use the phosphomatics API. To obtain an API key, contact the devlopers.