Phosphomatics is a public resource for statistical and downstream analysis of phosphoproteomics data. The graphical web resource can be accessed here. A limited API is available that allows users to automate the process of uploading and initial data processing. Here, we provide a python wrapper to this API.

This is very much a work in progress so use at your own risk.


Create a virtual environment:

virtualenv venv
source venv/bin/activate

Either install from PyPi:

pip install phosphomatics-api-wrapper

Or clone the GitHub repo and install manually:

git clone
cd phosphomatics-api-wrapper
pip install -r requirements.txt
python install

API Keys

A unique key is required to use the phosphomatics API. To obtain an API key, contact the devlopers.